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600 Point Gromacs!

Posted: Mon Dec 27, 2004 10:10 am
by unregistered
600 Point Gromacs!

http://vspx27.stanford.edu/psummary.html

Has anybody gotten one of those WHOPPERS?

Posted: Mon Dec 27, 2004 12:04 pm
by JanW
Yup, both of my boxes have been folding these 24/7 since Dec 20/21 - recieved 6 in a row so far (3 on each box). They complete in about 2.5 days on my Athlon XP's (2000 and 2200 MHz). Under normal conditions (no big WU bonus) I'd say I can barely make 200ppd. After submitting four of these, I was GREEN (400+ ppd 24hr average)!! Yayyy!!! I was even close to making the top 20 contributors list with just my two Athlon XP's. Really weird - or scary, depending on how you think about it. Needless to say that those 1200 points I received in one day is something I won't top in a while.

These beasts even seem to do some good to the production of our team: three consecutive days of 40k+ points, hadn't happened since early December (or is this just the usual fluctuation)? Surely boosted my production... Maybe a Xmas gift from Stanford?

They still don't have a description up on what the project is actually about.

EDIT: typos corrected

PS: unregistered: I'm due to overtake you in 571 days (if Stanford keeps the supply of 600 point Gromacs up 'til then) ! :wink:

Posted: Mon Dec 27, 2004 12:42 pm
by Webfire
Yeah I got one a couple of days ago.

Posted: Tue Dec 28, 2004 4:41 am
by peteamer
Had a few here too. 8)


Pete

Posted: Wed Dec 29, 2004 6:17 am
by Tibors
My two fast PCs (2.8GHz and 3.0GHz P4s) are each working on their third one. It takes them about 2 days, 21 hours to finish one. My slow PC (1GHz Via C3) just picked one up too. It is projected to finish in about 14 days, but that is excluding the time I will be playing Settlers IV :)

Posted: Wed Dec 29, 2004 7:55 am
by petemg
Yep, here too - I think all of my boxes got them on the same day, because I had 36 hours of panic (0 WUs reported) and then a massive blast of 3000 points as 5 of them reported at the same time. Christmas day, no less! And I didn't even ask Santa for a boatload of points :P

btw! I'm dark red! I wonder how long it will last... Now if only I can get 3200 more points before 12/31 at 11:59 pm ...

Posted: Wed Dec 29, 2004 10:38 am
by burcakb
So that's why I've been getting only the tiny 57 pointers that slow down my Athlon64 to 100 ppd!!! You were all hogging the good ones :)

Well, at least I started getting a few 300+ pointers in between and I'm back to 200+ ppd on that machine.

Posted: Wed Dec 29, 2004 1:04 pm
by teknerd
man all my machines must have been getting those, cause i have half the WU's but more points than the guy right behind me.

Posted: Tue Jan 04, 2005 3:11 pm
by unregistered
I GOT ONE!!!!!

YEEEEEE HAAW

Posted: Tue Jan 04, 2005 3:34 pm
by burcakb
Heheh, I got one too. Trodas is going to get a serious wakeup call sometime soon :)

Posted: Wed Jan 05, 2005 6:16 pm
by JanW
Hmm, I just lost what was going to be the 11th of these 600 point units : it got deleted after 65% of the work done :cry:

Anyone had this happen, or any idea of what might be going on? I'm new to folding and this is the first WU I lose. Here's the interesting parts from the log:

Code: Select all

[07:30:24] - Calling './FahCore_78.exe -dir work/ -suffix 00 -checkpoint 15 -forceasm -verbose -lifeline 17175 -version 502'
[07:30:24]
[07:30:24] *------------------------------*
[07:30:24] Folding@Home Gromacs Core
[07:30:24] Version 1.70 (October 24, 2004)
[07:30:24]
[07:30:24] Preparing to commence simulation
[07:30:24] - Assembly optimizations manually forced on.
[07:30:24] - Not checking prior termination.
[07:30:25] - Expanded 2910718 -> 16166533 (decompressed 555.4 percent)
[07:30:26] - Starting from initial work packet
[07:30:26]
[07:30:26] Project: 1135 (Run 8, Clone 26, Gen 0)
[07:30:26]
[07:30:26] Assembly optimizations on if available.
[07:30:26] Entering M.D.
[07:30:33] Protein: p1135_RIBO_FSpeptide_HEL
[07:30:33]
[07:30:33] Writing local files
[07:30:35] Extra SSE boost OK.
[07:30:35] Writing local files
[07:30:35] Completed 0 out of 250000 steps  (0%)
[07:45:36] Timered checkpoint triggered.
[08:00:36] Timered checkpoint triggered.
[08:03:56] Writing local files
[08:03:56] Completed 2500 out of 250000 steps  (1%)

... (a day and a half later) ...

[22:24:01] Completed 162500 out of 250000 steps  (65%)
[22:31:28] CoreStatus = 0 (0)
[22:31:28] Client-core communications error: ERROR 0x0
[22:31:28] Deleting current work unit & continuing...
[22:32:21] Trying to send all finished work units
[22:32:21] + No unsent completed units remaining.
[22:32:21] - Preparing to get new work unit...
Maybe I should start backing up my folding directory regularly...
Nothing particular happened at 22:31:28, that I'm aware of.

Posted: Thu Jan 06, 2005 11:03 am
by peteamer
Jan, there's a fair bit of info over at the F@H forums ref Error Codes 0x0 & 0x1, both seem to be only on linux and variants (incl. mac) and appear to be to do with 'incorrect shutting down sequence of the core'.

However I managed it this afternoon on XP by killing the wrong process in task manager :oops: . 50% through a 600 point WU that was then deleted :shock: ... and that was after an act of stupidity earlier in the week that cost me a full 600 points. :cry:


Pete

Posted: Thu Jan 06, 2005 2:18 pm
by unregistered
That happens, especially on fairly new cores like the 600 pointers. It is rare for most, but for peteamer :twisted: these things are common. He suffers from VOODOO folder stress SINdrom :lol: .

Posted: Thu Jan 06, 2005 3:03 pm
by burcakb
Yeee haaaa. Got my second one. On my pally unfortunately = 100+ hours

Posted: Fri Jan 07, 2005 12:02 am
by JanW
Thanks peteamer and unregistered for your responses. I'll just wait for now and see if it happens again --- did install a cron job, though, that backs up my folding directory every three hours.

Over at F@H forums, I saw that Error 0x0 means that "the client doesn't really know what happened, except that it's serious" :? There seemed to be a lot of talk about glibc problems on Linux, but that was a while ago. It could also be simply instability, for example processor overheating. As the only thing I know about my XP temperature is that it is above 62C (placed a thermal probe right next to the core), that might be the problem... Had been stable for a month, though, running 24/7.

Ah, I guess the 100% big WU bonus we get on these is there for a reason: even after losing an occasional unit, I still want more of them :P
Which brings me on-topic again: folding number 11 and 12 right now (should be done tomorrow). So far 6000 of my 8740 points come from these biggies :D Just thought I'd share for those of you who wonder why you didn't get any :twisted:

Posted: Fri Jan 07, 2005 1:42 am
by unregistered
62º is a little toasty. I have a rig that is similar to yours, except I have an XP2800(@2.09) and a Thermalright SP97/Panaflo92mmL1a(@~9v) combo(thermalrights are cool). According to Mbm5 CPU is 47º. I just vacumed the heatsinks with a crevice attachment, was 54º. Try MBM5, even though support was discontinued, it works on that board(mine same). Speedfan is also an option. I have it on my HTPC, it has more features, but I have had zero time to play with these things lately. I'm not sure if they have Linux versions. I have the same case without the intake fan, stock rear fan and PSU(loud), just one SATA 160 Spinpoint.

Posted: Fri Jan 07, 2005 6:01 am
by JanW
Sorry for drifting offtopic here...

Yes, unregistered, I found 62C outside the die to be on the hot side, too - and thanks for sharing your experience with that setup. I don't have a Windows license and have given up on reading the on-die diode under Linux for my board, so this is the only info I have.

Having tried around a little, I don't see how to improve things right now. Turning up the voltage on the CPU fan doesn't gain me much in temperature (for some odd reason), and the sacrifice in noise is just not worth it. Before someone suggests re-seating the HS, I'd add that I did that about a dozen times :x (no exaggeration!) and while I won't guarantee that it's seated perfectly, it's the best I can do.
My guess was that case air flow is suboptimal --- but your temperatures with a very similar setup seem to prove that wrong. Nevertheless, the case is due for the standard front-bezel mod, and I also have plans for a Bluefront-like PSU relocation (using a SuperTornado 300W), but I won't have time for that for a month or so.

Meanwhile I'm back to 62% on a 600 point WU on that rig. As long as WU losses don't become more frequent, I won't do anything about temperatures for now. It's just that, had these WU's been reported to be flaky, I could have blamed them :twisted: But that doesn't seem to be the case :(

Posted: Fri Jan 07, 2005 6:31 am
by unregistered
Check your temp in your bios,during a re-boot, that will give you a fairly accurate reading. It should not cool off much during re-boot.

I just sent a completed 600 pointer to Stanford and have another going early afternoon. It's going to be my best day ever. :D :D

Posted: Fri Jan 07, 2005 8:24 am
by wooglin
you could always clock down the FAH cpu utilization to 70% or so, see if the temps decrease a bit... sure the WU will take a bit longer, but at least you won't lose them

Posted: Fri Jan 07, 2005 9:36 am
by JanW
Thanks wooglin, I'll keep this one in mind --- just one stupid question: how do I specify a maximum CPU utilization for FAH under Linux? :oops:

Posted: Fri Jan 07, 2005 9:52 am
by wooglin
errrr... sorry, I was thinking about the GUI. I don't know the flags for the text-console I assume you're using under Linux

Posted: Fri Jan 07, 2005 1:06 pm
by Putz
Use the "-config" flag when starting it to set processor utilization. Say "yes" to advanced options when prompted.

Example:

Code: Select all

./FAH502-Linux.exe -config <other options, such as verbosity, advmethods, etc.>
The "-configonly" option also allows configuration of the client, but exits after configuration is complete instead of proceeding normally.

Posted: Fri Jan 07, 2005 3:02 pm
by JanW
Thank you Putz and sorry again to everyone for hijacking this thread!

Posted: Tue Jan 11, 2005 2:58 pm
by x1m
Mine seems a little slow. Its taking me an average of 41mins/frame on a 3200+. That sound right?

Posted: Tue Jan 11, 2005 3:10 pm
by tomcat
>Mine seems a little slow. Its taking me an average of 41mins/frame on a >3200+. That sound right?

seems a bit slower than normal. i get 35:16 per frame on a 2600+ overclocked and 34:08 on the overclocked XP-M 2500+ (2.3Ghz).

(the A64 3200+ at 2.4Ghz does them at 29:26 per frame)

Markus

Posted: Tue Jan 11, 2005 3:55 pm
by unregistered
How much RAM do you have in that box? I think these peptide gromacs unlike typical WUs, are RAM demanding, it also sends a rather large results file.

That is slower than what I have been seeing on my 2800 or [email protected].
Ive noticed the WUs are not very consistent time/frames. Do you have something else runing in the background?

Posted: Wed Jan 12, 2005 6:35 am
by nici
Mine is also at 29 minutes per frame.. athlon 2600+, 1Gig ram. Oh, and i think you are right about these using a lot of memory, FahCore_78.exe is using 104720K of memory.. :!: I assume this isnt common, i have not checked mem usage during other WUs so im not shure but it seems really high.

edit:typos..

Posted: Wed Jan 12, 2005 10:17 am
by Tibors
Well these WU's aren't nicknamed BigWU's for nothing. And the 240MB minimum physical memory required to get them is for the same reason.

On my Hush: 104728K memory used by FahCore_78.exe.
On my P4 2.8: 104816K memory used by FahCore_78.exe.
On my P4 3.0: 103392K memory used by FahCore_78.exe.

This is why you get double the points for working on these WU's.

Posted: Wed Jan 12, 2005 10:53 am
by peteamer
For the record...

55mins a frame on an XP2400+

1:05 - 1:10 on a XP1600+

Though these times vary a bit, depending on how ... 'chewy'... the mouthfulls are. :D


Pete

Posted: Thu Jan 20, 2005 12:04 pm
by herosformula
I built a dual Opteron system after the holidays, all it appears to get are these 600 point units.